Overview
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Mango
iMango
Papaya
Multi-image Analysis GUI
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User Guide
Troubleshooting
Acknowledgements

Image Browser      Navigation      Window Settings      Toolbar Options      ROI Touch Tools      ROI Edit Menu      Add Menu      Customize Menu      Analysis Menu
Transferring Data      Display Features      Atlases      Settings     

Add Menu

Image Browser
These menu options can be used to create new ROI masks.

Add ROI
Add ROI. Use this option to create an ROI in the shape of a cube or sphere at the current coordinate.

Threshold to ROI. Create an ROI based on a threshold. Select the Range option to use both a lower and upper threshold. Use Shrink Wrap to find only the outer ROI bound, ignoring any internal area below lower or above upper theshold. Shrink Wrap can be performed in slice mode (slice direction of main slice) or 3-D mode.

ROI Logic Calculator
Combine ROIs. Use this tool to build an expression, combining ROIs. Each color is represented by a single letter. For example, to build an intersection of the red and green ROIs, enter: (r and g). Tap the button to the left of the equals sign to select the output color.